program for processing raw data from raw root file added

convertRawToAnalyzed/README.txt

+Script for process RAW root files.
+
+1) use command "make" or "make convertRawToAnalyzed" in folder Neurad_tests
+
+2) in folder convertRawToAnalyzed use command: "./convertRawToAnalyzed infile ofile Asize"
+ where is first parameter (TString infile)  - path to the root file with rawData
+	 second parameter (TString ofile) - path to the root file with new data
+	third parameter	(Int_t Asize) - size of the of AEvent class object (1000 or 1024)
+
+Example: "./convertRawToAnalyzed ../data/rawDataTektronix/exp2.root ../data/dataTektronix/exp2.root 1000"

convertRawToAnalyzed/analyse.cpp

-void analyse()
+#include <fstream>
+
+#include "TString.h"
+#include "TFile.h"
+#include "TError.h"
+#include "TTree.h"
+#include <stdio.h>
+#include <stdlib.h>
+
+#include "../dataClasses/RawEvent.h"
+#include "../dataClasses/AEvent.h"
+
+int main(int argc, char* argv[])
 {
-	gSystem->Load("../libData.so");
+//	gSystem->Load("../libData.so");
+
+	if (argc != 4) {
+		// Tell the user how to run the program
+		std::cerr << "Usage: " << argv[0] << " [list with input files] [outputfile] [number of points in one event (1000 of 1024)]" << std::endl;
+		/* "Usage messages" are a conventional way of telling the user
+		 * how to run a program if they enter the command incorrectly.
+		 */
+		return 1;
+	}
+	// Print the user's name:
+	TString infiles = argv[1];
+	TString ofile = argv[2];
+	TString Asize = argv[3];		
 
-	TFile *f = new TFile("../data/rawDataDSR4/NeuRad_test_07_1.root");
+	TFile *f = new TFile(infiles.Data());
 	TTree *tr = (TTree*)f->Get("rtree");
 
 	const Int_t noBranches = 4;
@@ -19,12 +44,12 @@ void analyse()
 
 //	tr->SetMakeClass(1);
 
-	TFile *fw = new TFile("../data/dataDSR4/analysis_07_1.root", "RECREATE");	//create .root file with somehow analyzed data
+	TFile *fw = new TFile(ofile.Data(), "RECREATE");	//create .root file with somehow analyzed data
 	TTree *tw = new TTree("atree", "title of drs4 analysis tree");	//create analysis tree atree in it
 
 	AEvent *wevent[noBranches];	// pointer to the array (of AEvent class) in which analyzed data for each channel will be put
 	for (Int_t j = 0; j<noBranches; j++) {
-		wevent[j] = new AEvent();
+		wevent[j] = new AEvent(atoi(Asize));
 		bName.Form("Ach%d.", j);
 		wevent[j]->SetInputEvent(&revent[j]);	//takes raw event from RawEvent
 		wevent[j]->SetCFratio(cfRatio);
@@ -54,5 +79,5 @@ void analyse()
 	tw->Write();
 	fw->Close();
 
-	return;
+	return 1;
 }

convertTektronix/IntegralFULL.cpp

-#include "TF1.h"
-
-void IntegralFULL(){
-
-	Int_t j,i,nentry,NumM;
-	Double_t A[1000]; /// амплитуды с сырых данных (отрицательные)
-	Double_t T[1000];
-	Double_t Am[1000]; // амплитуды с перевёрнутых пиков
-	Double_t Tim[1000];
-	Double_t sum,zeroLEVEL1,zeroLEVEL2,tm,t1_15,m,m1_15,t2_15,m2_15,tL_15,mL_15,Integrall,LinPar,ChiSquare,t_90;
-	TString var;
-
-	//TF1 *func = new TF1("fit",p,0,20e-09,1); // функция фитирования
-	TF1 *fit1 = new TF1("fit1","[0]");
-	fit1->SetParName(0,"Rlevel");
-	fit1->SetRange(0,2e-08);
-
-	TF1 *fit2 = new TF1("fit2","[0]"); ////////// создание функций фитирования
-	fit2->SetRange(8e-08,1e-07);
-	fit2->SetParName(0,"Llevel");
-
-	TF1 *fit3 = new TF1("fit3","[0]*x+[1]");
-	fit3->SetParName(0,"LinPar");
-
-	TFile *f = new TFile("exp2.root","READ");
-	TTree *tree1 = (TTree*)f->Get("tree");
-//////	
-	TBranch *branch1 = tree1->GetBranch("A");
-	branch1->SetAddress(A);
-	
-	TBranch *branch2 = tree1->GetBranch("T");
-	branch2->SetAddress(T);
-//////
-	TFile *f1 = new TFile("exp2Integral.root","RECREATE"); // файл для записи
-	TTree *theTree = new TTree("theTree","peak");
-	theTree->Branch("Am",Am,"Am[1000]/D");
-	theTree->Branch("Tim",Tim,"Tim[1000]/D");
-	theTree->Branch("sum",&sum,"sum/D");
-	theTree->Branch("zeroLEVEL1",&zeroLEVEL1,"zeroLEVEL1/D");   
-	theTree->Branch("zeroLEVEL2",&zeroLEVEL2,"zeroLEVEL2/D"); 
-	theTree->Branch("tm",&tm,"tm/D");   	//// tm - положение пика(максимума амплитуды) записывается время(T[i]) при котором этот максимум был
-	theTree->Branch("t1_15",&t1_15,"t1_15/D"); 		/// время когда амплитуда достигла 20 процентов от максимума( смотрим слева направо)
-	theTree->Branch("t2_15",&t2_15,"t2_15/D"); 
-	theTree->Branch("m",&m,"m/D"); // максимальная амплитуда
-	theTree->Branch("m1_15",&m1_15,"m1_15/D"); // амплитуда в первой точке превышения 20%
-	theTree->Branch("m2_15",&m2_15,"m2_15/D"); // амплитуда во второй точке превышения 20%
-	theTree->Branch("tL_15",&tL_15,"tL_15/D"); // время последнего превышения 20%
-	theTree->Branch("mL_15",&mL_15,"mL_15/D"); //амплитуда в последнем превышении 20%
-	theTree->Branch("Integrall",&Integrall,"Integrall/D"); //интеграл в диапозоне 20 нс
-	theTree->Branch("LinPar",&LinPar,"LinPar/D"); //параметр фита прямой границы сигнала
-	theTree->Branch("ChiSquare",&ChiSquare,"ChiSquare/D"); //хи квадрат
-///////// заполнение дерева
-	TCanvas *c1 = new TCanvas("c","zero line"); 
-	j=0;
-	for(j=0;j<tree1->GetEntries();j++)
-	{
-		tree1->GetEntry(j);
-		sum=0; // обнуление интеграла
-		m=0;  	// и максимума
-		for(i=0;i<1000;i++){  			// нахожу интеграл, полный, точку максимума для фрейма номер j
-			Am[i] = -A[i];
-			Tim[i] = T[i];
-			if((Am[i]>m) || (Am[i]==m)){m = Am[i];tm = T[i];}
-			sum = sum + Am[i];
-		}
-		NumM = (tm - 5e-013)*(1e+10); // номер точки (0,1000) с максимальной амплитудой сигнала
-		Integrall=0;
-		for(i=0;i<1000;i++){  			// нахожу интеграл, c границами
-			if( (Tim[i]>(tm-3e-9)) && (Tim[i]<(tm+17e-9)) ) {Integrall = Integrall + Am[i];}
-		}
-////////////////// делаю только для первых 12 фреймов
-			{		
-			TGraph *gr1 = new TGraph(1000,Tim,Am); // поиск нуля
-			gr1->Draw("Al*");
-			gr1->Fit("fit1","R");
-			zeroLEVEL1  = fit1->GetParameter(0);			
-			c1->Update();
-			gr1->Fit("fit2","R");
-			zeroLEVEL2  = fit2->GetParameter(0);			
-			c1->Update();			
-			m1_15=0;
-			t1_15=0; //поиск начальной границы поднятия на 20%
-			t2_15=0;m2_15 = 0; mL_15 = 0;			
-			for(i=NumM;i>0;i--)
-			{
-				if((Am[i]-zeroLEVEL1)<0.1*(m-zeroLEVEL1)) {t1_15 = Tim[i+1];m1_15 = A[i+1];break;}						
-			}
-			for(i=NumM;i>0;i--)
-			{
-				if((Am[i]-zeroLEVEL1)<0.9*(m-zeroLEVEL1)) {t_90 = Tim[i+1];break;}						
-			}			
-			for(i=NumM;i<1000;i++)
-			{
-				if((Am[i]-zeroLEVEL1)<0.15*(m-zeroLEVEL1)) {t2_15 = Tim[i-1];m2_15 = A[i-1];break;}						
-			}
-			for(i=NumM;i<1000;i++)
-			{
-				if((Am[i]-zeroLEVEL1)>0.15*(m-zeroLEVEL1)) {tL_15 = Tim[i-1];mL_15 = A[i-1];}						
-			}
-			fit3->SetRange(t1_15,t_90);
-			gr1->Fit("fit3","R");
-			c1->Update();
-			ChiSquare = fit3->GetChisquare();
-			LinPar = fit3->GetParameter(0);
-		}
-		theTree->Fill();
-	}
-//////////	
-	theTree->Write();
-	f1->Close();
-	f->Close();
-}

convertTektronix/README.txt

 Script for convertation of text files acquired by Tektronix 7354 oscilloscope to ROOT file.
+
+1) use command "make" or "make convertTektronix" in folder Neurad_tests
+
+2) in folder convertTektronix use command: "./convertTektronix ../data/rawDataTektronix/infiles.dat ../data/rawDataTektronix/exp2.root"
+ where is first parameter (../data/rawDataTektronix/infiles.dat) - path to the file with rawData from oscilloscope 
+	second parameter (../data/rawDataTektronix/exp2.root) - path to the root file with rawData created by this programm	

convertTektronix/analyseRawData.cpp

-void analyseRawData()
-{
-	gSystem->Load("../libData.so");
-
-	TFile *f = new TFile("../data/rawDataTektronix/exp2.root");
-	TTree *tr = (TTree*)f->Get("rtree");
-
-	const Int_t noBranches = 4;
-
-	TString bName;
-	RawEvent *revent[noBranches];	// pointer to the array (of RawEvent class) in which raw data for each channel will be put
-	for (Int_t j = 0; j<noBranches; j++) {
-		revent[j] = new RawEvent();	//each raw event element is of class RawEvent()
-		bName.Form("ch%d.", j);
-		tr->SetBranchAddress(bName.Data(), &revent[j]);	//read the tree tr with raw data and fill array revent with raw data
-	}
-
-	TH1F *hist1 = new TH1F("hist1", "h1 title", 1000, 0, 100);
-	TH1F *hist2 = new TH1F("hist2", "h2 title", 1000, 0, 100);
-	TH1F *hist3 = new TH1F("hist3", "h3 title", 1000, 0, 100);
-	TH1F *hist4 = new TH1F("hist4", "h4 title", 1000, 0, 100);
-
-	TF1 *fit1 = new TF1("fit1","-[0]*exp(-x*[1])");
-	fit1->SetRange(34,50);
-	fit1->SetParName(1,"tD");
-
-	Long64_t nEntries = tr->GetEntries();
-
-	//loop over events
-	for (j = 0; j < nEntries; j++) {
-		tr->GetEntry(j);
-		for(Int_t i =0;i<1000;i++){
-			//hist->SetBinContent(i,revent[0]->GetAmp(i));
-			hist1->AddBinContent(i,revent[0]->GetAmp(i));
-			hist2->AddBinContent(i,revent[1]->GetAmp(i));
-			hist3->AddBinContent(i,revent[2]->GetAmp(i));
-			hist4->AddBinContent(i,revent[3]->GetAmp(i));
-		}
-	}
-
-	TCanvas *c1 = new TCanvas("c1","test",10,10,1000,600);
-	c1->Divide(2,2);
-
-	c1->cd(1);
-	hist1->Draw();
-	c1->cd(2);
-	hist2->Draw();
-	hist2->Fit("fit1","R","");
-	c1->cd(3);
-	hist3->Draw();
-	c1->cd(4);
-	hist4->Draw();
-
-}

convertTektronix/infiles.dat

-ch1
-../data/rawDataTektronix/ch12016.12.07-02.11.54.dat
-../data/rawDataTektronix/ch12016.12.07-08.48.05.dat
-../data/rawDataTektronix/ch12016.12.07-10.03.01.dat
-ch2
-...
-...
-...
-ch3
-...
-...
-...
\ No newline at end of file

convertTektronix/read.cpp

-void read() {
-	//Double_t N[5]; // массив для чисел ()
-	//ifstream myfile;
-	//Double_t string_to_double( const std::string& s );
-	//const Int_t par1 = 5;
-	//const Double_t par2 = 5.34;
-	// ....
-	// ....
-	gSystem->Load("../libData.so");
-
-	asdasd();
-
-	Double_t A[1000];
-	Double_t T[1000];
-	Int_t i,j,n,p,Nchannel;
-	TString line;
-	Double_t amp,time;	
-
-	TFile *f1 = new TFile("exp2.root","RECREATE");
-	TTree *tree = new TTree("tree","signal");
-	tree->Branch("A",A,"A[1000]/D");
-	tree->Branch("T",T,"T[1000]/D");
-
-
-	RawEvent *event1 = new RawEvent();
-	tree->Bronch("rawEvent1", "RawEvent", &event1);
-	RawEvent *event2 = new RawEvent();
-	tree->Bronch("rawEvent2", "RawEvent", &event2);
-	RawEvent *event3 = new RawEvent();
-	tree->Bronch("rawEvent3", "RawEvent", &event3);
-	RawEvent *event4 = new RawEvent();
-	tree->Bronch("rawEvent4", "RawEvent", &event4);
-	
-	RawEvent **Nevent;
-	Nevent = new RawEvent *[4];
-	Nevent[0] = event1;
-	Nevent[1] = event2;
-	Nevent[2] = event3;
-	Nevent[3] = event4;	
-/////////
-	ifstream myfile; 	// открываю файл с названиями файлов с данными
-	ifstream myfile1;
-	myfile.open("../data/rawDataTektronix/infiles.dat");
-	if (myfile.is_open()) {
-		TString fileName;
-		while (!myfile.eof()) {p++;
-
-			fileName.ReadLine(myfile);
-			if ( fileName.IsNull() ) break;
-
-			if ( fileName.EqualTo("ch1") ) {Nchannel = 1; }
-			if ( fileName.EqualTo("ch2") ) {Nchannel = 2; }
-			if ( fileName.EqualTo("ch3") ) {Nchannel = 3; }
-			if ( fileName.EqualTo("ch4") ) {Nchannel = 4; }
-
-			cout<<fileName.Data()<<" "<< p << " nchannel = "<<Nchannel<<endl;
-			if ( fileName.BeginsWith("ch") || fileName.BeginsWith("//") ) continue; //есть строки ch1,2			
-
-			myfile1.open( fileName.Data() );
-			if (myfile1.is_open()) {
-				//cout<<" I found data! number "<<endl;
-				amp=time=0;
-				
-				while (!myfile1.eof()) {
-					line.ReadLine(myfile1);		
-					n=i/1000;			// if ((i==1002)||(i==900)||(i==2002)||(i==8002)) {cout<<i<<" "<<n<<endl;}
-		
-					time = 5e-013+ (i-1000*n)*1e-010;
-					sscanf(line.Data(), "%lf", &amp);
-					A[i-1000*n] = amp;
-					T[i-1000*n] = time;
-
-					Nevent[Nchannel-1]->SetAmp(amp, i-1000*n);
-					Nevent[Nchannel-1]->SetTime(time, i-1000*n);
-
-					if(i-1000*n ==999) {
-						tree->Fill();
-
-						for(j=0;j<1000;j++){
-							T[j]=0;
-							A[j]=0;
-						}
-						Nevent[Nchannel-1]->Reset();
-					}
-					i++;	
-				}
-			}
-			else {
-				cout<<" asdasdasd "<<endl;
-				Error("read.cpp", "Some error when opening file %s", fileName.Data());
-				return;
-			}
-			myfile1.close();
-		}
-		myfile.close();
-	}
-	else {Error("read.cpp", "Some error when opening file","infiles.dat");return;}
-
-////////////////
-
-	
-	TString name;
-	name.Form("../data/rawDataTektronix/ch%d2016.12.07-02.11.54.dat",1);
-////////////
-
-	ifstream myfile1;
-	myfile1.open(name.Data());
-	if (!myfile1.is_open()) {
-		Error("read.c", "Some error when opening file");
-		return;
-	}
-
-	i=0;
-	
-	myfile1.close();
-
-	tree->Write();
-	f1->Close();
-}
-
-Double_t asdasd() {
-	cout << "Function called!!!!!!!!!!!" << endl;
-}

makefile

@@ -31,8 +31,8 @@ CONVERTRAWTOANALYZED = $(PWD)/convertRawToAnalyzed
 
 all: libData.so \
 	read_binary_DRS4 \
-	convertTektronix
-
+	convertTektronix \
+	convertRawToAnalyzed
 
 #ROOT html documentation, it will be done as a program which will be alsa compiled by this makefile, program will be as a last condition after all of the libraries
 #htmldoc: libAculData.so
@@ -69,6 +69,14 @@ read_binary_DRS4: $(CONVERTDRS4)/read_binary.cpp libData.so
 	$(CC) -o $(CONVERTDRS4)/read_binary_DRS4 $(CONVERTDRS4)/read_binary.cpp -lm `root-config --cflags --libs` -L $(PWD) -lData -Wl,-rpath,$(PWD)
 	@echo 'Finished building target: $@'
 	@echo ' '
+
+convertTektronix: $(CONVERTTEKTRONIX)/read1.cpp libData.so
+	@echo 'Building target: $@'
+	@echo 'Invoking: GCC C++ Linker'
+#	$(CC) -L $(ROOTLIBS) -shared -o"libData.so" $(DATAOBJS) $(DATALIBS)
+	$(CC) -o $(CONVERTTEKTRONIX)/convertTektronix $(CONVERTTEKTRONIX)/read1.cpp -lm `root-config --cflags --libs` -L $(PWD) -lData -Wl,-rpath,$(PWD)
+	@echo 'Finished building target: $@'
+	@echo ' '
 	
 convertRawToAnalyzed: $(CONVERTRAWTOANALYZED)/analyse.cpp libData.so
 	@echo 'Building target: $@'