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AculUtils
Commit ee5da758 authored by Kostyleva D.A's avatar Kostyleva D.A
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AculData/AculCalibration.cpp
View file @ ee5da758
......@@ -258,17 +258,17 @@ Int_t AculCalibration::PeaksFitting(TH1* hSpectrum, Option_t* option, Double_t s
}
Bool_t AculCalibration::EnergyPositions(const char* inputfile, const char* block,
const Int_t address, const char* treename, Int_t lowerchannel,
Int_t upperchannel, Int_t lowersubaddress, Int_t uppersubaddress)
{
TString iFile = inputfile;
TFile fr(iFile.Data());
return 1;
}
//Bool_t AculCalibration::EnergyPositions(const char* inputfile, const char* block,
// const Int_t address, const char* treename, Int_t lowerchannel,
// Int_t upperchannel, Int_t lowersubaddress, Int_t uppersubaddress)
//{
// TString iFile = inputfile;
// TFile fr(iFile.Data());
//
//
//
// return 1;
//}
Bool_t AculCalibration::SetInputParameters(const char* inputparfile)
{
......@@ -545,7 +545,6 @@ void AculCalibration::ShowSpectra(const char* filename, TCanvas* rawCanvas, Opti
fr.GetObject(histList->At(i)->GetName(), hDraw);
if (hDraw) {
hDraw->SetDirectory(0);
//hDraw->SetAxisRange(xaxismax, xaxismin); //nefunguje
fCurrentHistList.Add(hDraw);
fCurrentHStack->Add(hDraw);
}
......@@ -813,13 +812,46 @@ Bool_t AculCalibration::CalculateCalibParameters(const char* inputfile, const ch
}//for
//!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
//zapis histogramu v MeV do souboru .root
//
//urcite by se to dalo hodit do samostatne fce
//!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
fw->Close();
fr->Close();
fCalInformation->Close();
outcalfile.close();
return 1;
}
void AculCalibration::CalibrateRawSpectra(const char* inputfile, const char* block, const Int_t address,
const char* treename, Int_t lowerchannel, Int_t upperchannel,
Int_t nEBins, Int_t lowersubaddress, Int_t uppersubaddress) {
//input file with raw data opening
TString iFileName = inputfile;
TFile *fr = new TFile(iFileName.Data());
if ( !fr->IsOpen() ) {
Error("CalculateCalibParameters", "File %s was not opened and won't be processed", iFileName.Data());
return;
}
TTree *tr = (TTree*)fr->Get(treename);
if (!tr) {
Error("CalculateCalibParameters", "Tree %s was not found in file %s", treename, iFileName.Data());
return;
}
TH1I *hRaw = 0;
TH1F *hEnergy = 0;
/*Char_t histTitle[40];
TRandom3 ranGen(1);
TString detectorChannel;
TString histName;
TString histTitle;
TString fillCommand;
TString fillCondition;
TString oFileName;
//outputfile with calibrated spectra
if ( (lowersubaddress == 0) && (uppersubaddress == ADDRESSNUMBER-1) ) { oFileName.Form("%s[]E.root", block); }
......@@ -831,50 +863,86 @@ Bool_t AculCalibration::CalculateCalibParameters(const char* inputfile, const ch
TFile *fw = new TFile(oFileName.Data(), "RECREATE");
if (fw->IsOpen() == 0) {
Error("CalculateCalibParameters", "File %s was not created and won't be processed\n\n", oFileName.Data());
return 1;
return;
}
TH1F *hEnergy = 0;
TRandom3 ranGen(1);
Long64_t nEntries = tr->GetEntries();
for (Int_t i = lowersubaddress; i <= uppersubaddress; i++) {
Info("CalculateCalibParameters", "Calibration spectrum from address %s[%d]", block, i);
histName.Form("Hist%s[%d]E", block, i);
sprintf(histTitle, "%s: %s", iFileName.Data(), histName.Data());
hEnergy = new TH1F(histName.Data(), histTitle, 10000, 0., 10.);
printf("\n\n");
Info("CalculateCalibParameters", "Calculating calibration parameters for detector channel %s[%d].", block, i);
//TH1I object preparing
hRaw = new TH1I("name", "title", 4096, 0, 4095); //nastavovat hranice histogramu podle parametru fce
detectorChannel.Form("%s[%d]", block, i);
hEnergy->SetName(histName.Data());
fillCommand.Form("%f*(%s+%f)+%f >> %s", fA[address][i], detectorChannel.Data(), ranGen.Uniform(-0.5, 0.5), fB[address][i], hEnergy->GetName());
// fillCommand.Form("%f*(%s+%f)+%f >> %s", fA[address][i], detectorChannel.Data(), 0., fB[address][i], hEnergy->GetName());
cout << fillCommand.Data() << endl;
fillCondition.Form("%s > %f && %s < %f", detectorChannel.Data(), fLowerChannel, detectorChannel.Data(), fUpperChannel);
histName.Form("Hist%s[%d]", block, i);
hRaw->SetName(histName.Data());
fillCommand.Form("%s >> %s", detectorChannel.Data(), hRaw->GetName());
fillCondition.Form("%s > %d && %s < %d",
detectorChannel.Data(), lowerchannel, detectorChannel.Data(), upperchannel);
//filling from the .root raw data file and content arrangement
tr->Draw(fillCommand.Data(), fillCondition.Data(), "goff");
for (Int_t j = 0; j < nEntries; j++) {
//spectrum analysis
// fitControl = PeaksFitting(hRaw, "Q", fFitMinSigma);
// Info("CalculateCalibParameters", "Value of fitControl is: %d", fitControl); //ok
}
//incorrectly treated spectrum output
// if (fitControl != 0 && fCalInformation->IsOpen()) { //ok
// outcalfile << setw(39) << fitControl << endl;
// fCalInformation->cd();
// hRaw->SetLineColor(2); //red
// fCalInformation->cd();
// hRaw->Write();
// continue;
// }//if
tr->Draw(fillCommand.Data(), fillCondition.Data(), "goff");
//correctly treated spectrum saving
// if (fCalInformation->IsOpen()) {
// fCalInformation->cd();
// hRaw->SetLineColor(kGreen+3); //green
// hRaw->SetFillColor(kGreen+1);
// hRaw->Write();
// }//if
//calibration parameters calculation //ok
// for (Int_t j = 0; j < kRaNOPEAKS; j++) { //delat podle poctu zkoumanych piku
// calGraph->SetPoint(j, fPeak[j], fEnergy[j]); //calibration graph filling
// }//for
// calGraph->Fit(calFunction, "Q", "goff", 0, 4096); //omezit hlasitost fitovani, udelat volitelne, dodelat volby rozsahu
// outcalfile
// << block << "\t"
// << address << "\t"
// << i << "\t"
// << setprecision(4) << calFunction->GetParameter(1) << "\t"
// << setprecision(4) << calFunction->GetParameter(0) << "\t\t"
// << fitControl
// << endl;
// fA[address][i] = calFunction->GetParameter(1);
// fB[address][i] = calFunction->GetParameter(0);
fw->cd();
hEnergy->Write();
}//for
fw->Close();*/
//calibration of raw spectra using obtained parameters
Info("CalculateCalibParameters", "Energy spectrum from address %s[%d] calculating", block, i);
histName.Form("%sE", hRaw->GetName());
histTitle.Form("%s: %s", iFileName.Data(), histName.Data());
hEnergy = new TH1F(histName.Data(), histTitle.Data(), nEBins, 0., 10.);
// detectorChannel.Form("%s[%d]", block, i);
// hEnergy->SetName(histName.Data());
fw->Close();
fr->Close();
fCalInformation->Close();
outcalfile.close();
for (Int_t j = lowerchannel; j < upperchannel; j++) {
Int_t binCont = (Int_t)hRaw->GetBinContent(j);
// cout << j << ":\t" << hRaw->GetBinContent(j) << endl;
for (Int_t k = 0; k < binCont; k++) {
hEnergy->Fill( fA[address][i]*( j+ranGen.Uniform(-0.5, 0.5) ) + fB[address][i] );
// cout << j << ":\t" << fA[address][i]*( j+ranGen.Uniform(-0.5, 0.5) ) + fB[address][i] << endl;
// cout << j << ":\t" << fA[address][i] << endl;
}
}
return 1;
fw->cd();
hEnergy->Write();
}
}//for
}
void AculCalibration::ShowAnalyzedSpectra(const char *filename, TCanvas* fittedRawCanvas, Int_t xaxismin, Int_t xaxismax, Int_t subaddress)
......@@ -1048,6 +1116,10 @@ void AculCalibration::ShowEnergySpectra(const char *filename, TCanvas* energyCan
}
void AculCalibration::DivideCanvas(TCanvas *c1, Int_t inputs) {}
Bool_t AculCalibration::AddCalFileToList(const char* calfilelist)
{
//this function does not work at the moment
......
AculData/AculCalibration.h
View file @ ee5da758
......@@ -154,9 +154,11 @@ public:
// lowersubaddress: block subaddress
// uppersubaddress: block subbaddress
Bool_t EnergyPositions(const char* inputfile, const char* block,
const Int_t address, const char* treename, Int_t lowerchannel = 0,
Int_t upperchannel = 4095, Int_t lowersubaddress = 0, Int_t uppersubaddress = ADDRESSNUMBER-1);
void CalibrateRawSpectra(const char* inputfile, const char* block, const Int_t address, const char* treename, Int_t lowerchannel = 0, Int_t upperchannel = 4095, Int_t nEBins = 1000, Int_t lowersubaddress = 0, Int_t uppersubaddress = ADDRESSNUMBER-1);
// Bool_t EnergyPositions(const char* inputfile, const char* block,
// const Int_t address, const Int_t address, const char* treename, Int_t lowerchannel = 0,
// Int_t upperchannel = 4095, Int_t lowersubaddress = 0, Int_t uppersubaddress = ADDRESSNUMBER-1);
Int_t PeaksFitting(TH1* hSpectrum, Option_t* option = "", Double_t sigmamin = 2);
//
......@@ -167,7 +169,9 @@ public:
void FillRawSpectraFile(const char* rawdatafile, const char* block, const char* treename, TCanvas* rawCanvas = NULL, Option_t *option = "", Int_t xaxismin = 0, Int_t xaxismax = 4096);
void ShowRawSpectra(const char* filename, const Int_t block, TCanvas* rawCanvas = NULL, Int_t xaxismin = 0, Int_t xaxismax = 4096, /*TObjArray* histList = NULL,*/ const Int_t subaddress = 16);
void ShowSpectra(const char* filename, TCanvas* rawCanvas = NULL, Option_t *option = "", Int_t xaxismin = 0, Int_t xaxismax = 4096, /*TObjArray* histList = NULL,*/ const Int_t subaddress = 16);
//this function is written for old format of raw data
//do not use this function!!!!!!!!!!!
void ShowSpectra(const char* filename, TCanvas* rawCanvas = NULL, Option_t *option = "", Int_t xaxismin = 0, Int_t xaxismax = 4096, /*TObjArray* histList = NULL,*/ const Int_t subaddress = ADDRESSNUMBER);
void ShowAnalyzedSpectra(const char* filename, TCanvas* fittedRawCanvas = NULL, Int_t xaxismin = 0, Int_t xaxismax = 4096, Int_t subaddress = 16);
//This function displays analyzed spectrum from a file, divides the canvas into a sufficient number of pads and displays
//spectrums of each block subadress on the suitable pads or displays one selected spectrum .
......@@ -191,7 +195,7 @@ public:
void DivideCanvas(TCanvas *c1, Int_t inputs);
// void
//dodelat funkce TTree* Get...(...) pro raw, anal i E spectra
Bool_t AddCalFileToList(const char* calfilelist = "CalFileList.log");
......
TELoss/TELoss.h
View file @ ee5da758
......@@ -29,6 +29,10 @@ private:
int bsearch(int ntab, double *xtab, double x);
double aitken(int ntab, double *xtab, double *ytab, double x);
double aitken3(int ntab, double *xtab, double *ytab, double x);
//====================================================================
//== Interpolation by 4 points
//====================================================================
Double_t linear(int ntab, Double_t *xtab, Double_t *ytab, double x);
Double_t linear(int ntab, Double_t *xtab, Double_t *ytab, Int_t i0, double x);
......@@ -39,19 +43,57 @@ public:
void SetEL(int _mel, double _den);
void SetDen(double _den) {den = _den;}
int AddEL(double _zel, double _ael, double _wel=1.);
//===============================================================
//== Add one element
//===============================================================
void SetZP(double _zp, double _ap);
void SetEtab(int _ne, double e2); //from 0 MeV to e2 MeV, _ne elements
//===============================================================
//== Set list of energies and calculate R(E)
//===============================================================
void SetDeltaEtab(double r); //pro kazdou tlostku bude zvlastni tabulka, nebo taky ne
//===============================================================
//== Calculate and set list of dE(E)
//===============================================================
double GetZ() { return zp; };
double GetA() { return ap; };
double GetE(double e0, double r);
//==================================================================
//== Calculate new energy using linear interpolation
//==================================================================
double GetE0dE(double de, double r); //de in MeV, r in microns
//==================================================================
//== Calculate new energy from deltaE using linear interpolation
//==================================================================
double GetE0dE(double de); //de in MeV
double GetE0(double e, double r);
//==================================================================
//== Calculate new energy using linear interpolation
//==================================================================
double GetEold(double e0, double r);
//==================================================================
//== Calculate new energy using aitken interpolation
//==================================================================
double GetE0old(double e, double r);
//==================================================================
//== Calculate new energy
//==================================================================
double GetR(double e0, double e);
//==================================================================
//== Calculate new energy using linear interpolation
//==================================================================
double GetRold(double e0, double e);
//==================================================================
//== Calculate new energy
//==================================================================
void PrintRE();
void PrintdEE();
void PrintREtoFile();
......
calibration1.cxx
View file @ ee5da758
{
gSystem->Load("/home/dariak/Utilities/libAculData.so");
gSystem->Load("/home/dariak/AculUtils/libAculData.so");
AculCalibration cal;
cal.SetInputParameters();
cal.CalculateCalibParameters("clb01_0001.root", "SQ22", 22, "AnalysisxTree", 50, 700);
TCanvas *c1 = new TCanvas();
// cal->ShowRawSpectra("clb01_0001.root", 22, c1);
// cal.ShowSpectra("SQ22[].root", c1, "", 300, 800, 10);
// TFile filerootE("SQ22[]E.root");
// TFile filecal("SQ22[].cal");
// TDirectory dir("dir","dash");
// dir.Add("SQ22[].root");
cal.SetInputParameters(); //from .par
cal.CalculateCalibParameters("clb04_0001.root", "SQ22", 22, "AnalysisxTree", 100, 4095);
// CalculateCalibParameters(const char* inputfile, const char* block, const Int_t address, const char* treename, Int_t lowerchannel = 0, Int_t upperchannel = 4095, Int_t nEBins = 1000, Int_t lowersubaddress = 0, Int_t uppersubaddress = ADDRESSNUMBER-1);
TFile fr("SQ22[]E.root");
cout << fr.GetListOfKeys()->GetEntries() << " histograms" << endl;
TList *histList = fr.GetListOfKeys();
TH1 *hWork = 0;
for (Int_t i = 0; i < 32; i++)
{
fr.GetObject(histList->At(i)->GetName(), hWork);
cal->PeaksFitting(hWork);
}
}
calibration2.cxx
View file @ ee5da758
{
gSystem->Load("/home/dariak/Utilities/libAculData.so");
gSystem->Load("/home/dariak/AculUtils/libAculData.so");
AculCalibration cal;
cal->SetInputParameters();
cal->SetCalibrationParameters("./run1/SQ22[].cal"); //takes calibration parameters
cal->PrintCalibrationParameters(22, 22);
TCanvas *c1 = new TCanvas();
cal->CalibrateRawSpectra("clb03_0001.root", "SQ22", 22, "AnalysisxTree", 100, 800, 500); //takes data from raw file and calibrates it with obtained calibration parameters
TFile fr("SQ22[]E.root");
// TH1F *h1 = (TH1F*)fr.Get("HistSQ22[10]E");
// h1->Draw();
cout << fr.GetListOfKeys()->GetEntries() << " histograms" << endl;
TList *histList = fr.GetListOfKeys();
const Int_t noHist = histList->GetEntries();
const Double_t minE = 3;
const Double_t maxE = 8;
Int_t minBin, maxBin;
TH1 *hWork = 0;
c1->Clear();
c1->Divide(6, 6);
for (Int_t i = 0; i < 32; i++) {
for (Int_t i = 0; i < 32; i++)
{
fr.GetObject(histList->At(i)->GetName(), hWork);
c1->cd(i+1);
cal->PeaksFitting(hWork);
hWork->Draw();
}
/* c1->Divide(2, 2);
c1->cd(1);
fr.GetObject(histList->At(7)->GetName(), hWork);
cal->PeaksFitting(hWork);
hWork->Draw();
fr.GetObject(histList->At(8)->GetName(), hWork);
c1->cd(2);
cal->PeaksFitting(hWork);
hWork->Draw();
fr.GetObject(histList->At(23)->GetName(), hWork);
c1->cd(3);
cal->PeaksFitting(hWork);
hWork->Draw();
fr.GetObject(histList->At(24)->GetName(), hWork);
c1->cd(4);
cal->PeaksFitting(hWork);
hWork->Draw();
*/
}
parforcal.par
View file @ ee5da758
......@@ -6,10 +6,10 @@
6.002 E3 //in MeV
7.687 E4 //in MeV
100 lowerchannel //in channels
4096 upperchannel //in channels
0.35 lowerpeakhight //in relative units
800 upperchannel //in channels
0.5 lowerpeakhight //in relative units
0.5 upperpeakhight //in relative units
0.1 peakpositiontolerance //in relative units
2 fitfunctionlinewidth //integer 1 - 10
5 minfitsigma //minimal sigma of the peaks to be fitted
0.4 fithightthreshold //
2 minfitsigma //minimal sigma of the peaks to be fitted
0.3 fithightthreshold //
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